Publications by Rafal Bogacz

This is a list of all publications (co-)authored by Rafal Bogacz that are contained in the publications database of the Department of Computer Science, University of Bristol. To perform an alternative search of the publications database, please go to the publications database home page.

2013

• Rafal Bogacz, Optimal decision making in the cortico-basal-ganglia circuit (in press). Chapter in An Introduction to Model-Based Cognitive Neuroscience. March 2013. No electronic version available.

2012

• Elizabeth J Coulthard, Rafal Bogacz, Shazia Javed, Lucy K Mooney, Gillian Murphy, Sophie Keeley, Alan L Whone, Distinct roles of dopamine and subthalamic nucleus in learning and probabilistic decision making. Brain, in press, . November 2012. No electronic version available.
• Kevin Lloyd, Nadine Becker, Matthew W. Jones, Rafal Bogacz, Learning to use working memory: a reinforcement learning gating model of rule acquisition in rats. Frontiers in Computational Neuroscience, 6, pp. 87–. October 2012. No electronic version available. External information
• James Marshall, Rafal Bogacz, Iain Gilchrist, Consistent implementation of decisions in the brain. PLOS One, 7, pp. e43443–. September 2012. No electronic version available. External information
• Alexander Pavlides, S. John Hogan, Rafal Bogacz, Improved conditions for the generation of beta oscillations in the subthalamic nucleus-globus pallidus network. European Journal of Neuroscience, 36, pp. 2229–2239. July 2012. No electronic version available.

2011

• Michal Kucewicz, Mark Tricklebank, Rafal Bogacz, Matthew W. Jones, Dysfunctional prefrontal cortical network activity and interactions following cannabinoid receptor activation. The Journal of Neuroscience, 31, pp. 15560–15568. October 2011. No electronic version available.
• Rafal Bogacz, Tobias Larsen, Integration of reinforcement learning and optimal decision making theories of the basal ganglia. Neural Computation, 23, pp. 817–851. April 2011. No electronic version available. External information
• Andrew Lulham, Rafal Bogacz, Simon Vogt, Malcolm W. Brown, An infomax algorithm can perform both familiarity discrimination and feature extraction in a single network. Neural Computation, 23, pp. 909–926. April 2011. No electronic version available.
• Paul A. Howard-Jones, Skevi Demetriou, Rafal Bogacz, Jee H. Yoo, Ute Leonards, Towards a Science of Learning Games. Brain, Mind and Education, 5, pp. 33–41. March 2011. No electronic version available. External information
• Angela Onslow, Rafal Bogacz, Matthew W. Jones, Quantifying phase-amplitude coupling in neuronal network oscillations. Progress in Biophysics and Molecular Biology, 105, pp. 49–57. February 2011. No electronic version available.

2010

• Paul A. Howard-Jones, Rafal Bogacz, Jee H. Yoo, Ute Leonards, Skevi Demetriou, The neural mechanisms of learning from competitors. Neuroimage, 53, pp. 790–799. November 2010. No electronic version available. External information
• Birte U. Forstmann, Alfred Anwander, Andreas Schäfer, Jane Neumann, Scott Brown, Eric-Jan Wagenmakers, Rafal Bogacz, Robert Turner, Cortico-Striatal Connections Predict Control over Speed and Accuracy in Perceptual Decision Making. Proceedings of the National Academy of Sciences of the USA, 107, pp. 15916–15920. September 2010. No electronic version available. External information
• Alejo Nevado Holgado, John Terry, Rafal Bogacz, Conditions for the generation of beta oscillations in the subthalamic nucleus - globus pallidus network. The Journal of Neuroscience, 30, pp. 12340–12352. September 2010. No electronic version available. External information
• Jiaxiang Zhang, Rafal Bogacz, Bounded Ornstein-Uhlenbeck models for two-choice time controlled tasks. Journal of Mathematical Psychology, 54, pp. 322–333. May 2010. PDF, 420 Kbytes.
• Tobias Larsen, David S. Leslie, Edmund J. Collins, Rafal Bogacz, Posterior weighted reinforcement learning with state uncertainty. Neural Computation, 22, pp. 1149–1179. May 2010. No electronic version available. External information
• Jiaxiang Zhang, Rafal Bogacz, Optimal decision making on the basis of evidence represented in spike trains. Neural Computation, 22, pp. 1113–1148. May 2010. No electronic version available. External information
• Rafal Bogacz, Peter T. Hu, Philip Holmes, Jonathan D. Cohen, Do humans produce the speed-accuracy tradeoff that maximizes reward rate?. Quarterly Journal of Experimental Psychology, 63, pp. 863–891. May 2010. No electronic version available.
• Miriam Zackenhouse, Rafal Bogacz, Philip Holmes, Robust versus optimal strategies for two-alternative forced choice tasks. Journal of Mathematical Psychology, 54, pp. 230–246. April 2010. No electronic version available.
• Tobias Larsen, Rafal Bogacz, Initiation and Termination of Integration in a Decision Process. Neural Networks, 23, pp. 322–333. February 2010. No electronic version available.
• Rafal Bogacz, Eric-Jan Wagenmakers, Birte U. Forstmann, Sander Nieuwenhuis, The Neural Basis of the Speed-Accuracy Tradeoff. Trends in Neurosciences, 33, pp. 10–16. January 2010. No electronic version available. External information

2009

• James Marshall, Rafal Bogacz, Anna Dornhaus, Robert Planque, Tim Kovacs, Nigel Franks, On optimal decision-making in brains and social insect colonies. Journal of the Royal Society: Interface, 6, pp. 1065–1074. November 2009. No electronic version available. External information
• Jiaxiang Zhang, Rafal Bogacz, Philip Holmes, A comparison of bounded diffusion models for choice in time controlled tasks. Journal of Mathematical Psychology, 53, pp. 231–241. August 2009. No electronic version available.
• Rafal Bogacz, Optimal decision-making theories. Chapter in Handbook of Reward and Decision Making. Jean-Claude Dreher, Leon Tremblay, (eds.), pp. 375–397. July 2009. PDF, 300 Kbytes.

2008

• Peter Trimmer, Alasdair Houston, James Marshall, Rafal Bogacz, Elizabeth Paul, Mike Mendl, John McNamara, Mammalian Choices: combining fast-but-inaccurate and slow-but-accurate decision-making systems. Proceedings of the Royal Society B, 275(1649). ISSN 0962-8452, pp. 2353–2361. October 2008. PDF, 226 Kbytes. External information
• Zacharias Androulidakis, Andrew Lulham, Rafal Bogacz, Malcolm W. Brown, Computational models can replicate the capacity of human recognition memory. Network: Computation in Neural System, 19, pp. 161–182. September 2008. No electronic version available. External information

2007

• Jiaxiang Zhang, Rafal Bogacz, Superior Colliculus and Basal Ganglia Control the Saccadic Response in Motion Discrimination Tasks. 1st International Conference on Cognitive Neurodynamics, pp. 475–479. November 2007. No electronic version available.
• Rafal Bogacz, Marius Usher, Jiaxiang Zhang, James L. McClelland, Extending a biologically inspired model of choice: multi-alternatives, nonlinearity and value-based multidimensional choice. Philosophical Transactions of the Royal Society, Series B, 362, pp. 1655–1670. August 2007. PDF, 589 Kbytes.
• Rafal Bogacz, Optimal decision network with distributed representation. Neural Networks, 20, pp. 564–576. July 2007. No electronic version available.
• Rafal Bogacz, Samuel M. McClure, Jian Li, Jonathan D. Cohen, P. Read Montague, Short-term memory traces for action bias in human reinforcement learning. Brain Research, 1153, pp. 111–121. June 2007. PDF, 658 Kbytes.
• Rafal Bogacz, Optimal decision making theories: linking neurobiology with behaviour. Trends in Cognitive Sciences, 11(3), pp. 118–125. March 2007. PDF, 768 Kbytes. External information
• Rafal Bogacz, Kevin Gurney, The basal ganglia and cortex implement optimal decision making between alternative actions. Neural Computation, 19(2), pp. 442–477. February 2007. PDF, 240 Kbytes.
• Nick Yeung, Rafal Bogacz, Clay B. Holroyd, Sander Nieuwenhuis, Jonathan D. Cohen, Theta phase-resetting and the error-related negativity. Psychophysiology, 44, pp. 39–49. January 2007. PDF, 422 Kbytes.

2006

• Rafal Bogacz, Eric Brown, Jeffrey Moehlis, Phil Holmes, Jonathan D. Cohen, The physics of optimal decision making: A formal analysis of models of performance in two-alternative forced choice tasks. Psychological Review, 113(4), pp. 700–765. October 2006. PDF, 1628 Kbytes.

2005

• Phil Holmes, Eric Shea-Brown, Jeff Moehlis, Rafal Bogacz, Juan Gao, Gary Aston-Jones, Eric Clayton, Janusz Rajkowski, Jonathan D. Cohen, Optimal decisions: From neural spikes, through stochastic differential equations, to behavior. IEICE Transactions on Fundamentals of Electronics, Communications and Computer Sciences, 88(10), pp. 2496–2503. October 2005. PDF, 500 Kbytes.
• Eric Brown, Juan Gao, Philip Holmes, Rafal Bogacz, Mark Gilzenrat, Jonathan D. Cohen, Simple neural networks that optimize decisions. International Journal of Bifurcation and Chaos, 15(3), pp. 803–826. June 2005. PDF, 605 Kbytes.

2004

• Rafal Bogacz, Jonathan D. Cohen, Parameterization of connectionist models. Behavior Research Methods, Instruments, & Computers, 36(4), pp. 732–741. December 2004. PDF, 263 Kbytes.
• Nick Yeung, Rafal Bogacz, Clay B. Holroyd, Jonathan D. Cohen, Detection of synchronized oscillations in the electroencephalogram: An evaluation of methods. Psychophysiology, 41, pp. 822–832. November 2004. PDF, 1084 Kbytes.

2003

• Rafal Bogacz, Malcolm W. Brown, Comparison of computational models of familiarity discrimination in the perirhinal cortex. Hippocampus, 13, pp. 494–524. March 2003. PDF, 612 Kbytes.

2002

• Rafal Bogacz, Malcolm W. Brown, The restricted influence of sparseness of coding on the capacity of familiarity discrimination networks. Network: Computation in Neural System, 13, pp. 457–485. November 2002. PDF, 285 Kbytes.
• Rafal Bogacz, Malcolm W. Brown, Capacity of perirhinal cortex network for recognising frequently repeating stimuli. Neurocomputing, 44-46, pp. 337–342. February 2002. PDF, 48 Kbytes.

2001

• Rafal Bogacz, Computational models of familiarity discrimination in the perirhinal cortex. PhD thesis. Department of Computer Science, University of Bristol. October 2001. PDF, 926 Kbytes.
• Rafal Bogacz, Malcolm W. Brown, Christophe Giraud-Carrier, Emergence of Motion-sensitive Neurons Properties by Learning Sparse Code for Natural Moving Images. Chapter in Advances in Neural Information Processing Systems. Todd K. Leen, Thomas G. Dietterich, Volker Tresp, (eds.). ISBN 0-262-12241-3, pp. 838–844. June 2001. PDF, 153 Kbytes.
• Rafal Bogacz, Malcolm W, Brown, Christophe Giraud-Carrier, Model of co-operation between recency, familiarity and novelty neurons in the perirhinal cortex. Neurocomputing, 38, pp. 1121–1126. February 2001. PDF, 126 Kbytes.
• Rafal Bogacz, Malcolm W. Brown, Christophe Girraud-Carrier, Familiarity discrimination algorithm inspired by computations of the perirhinal cortex. Chapter in Emergent Neural Computational Architectures based on Neuroscience. Stefan Wermter, Jim Austin, David Willshaw, (eds.), pp. 435–448. February 2001. PDF, 172 Kbytes.
• Rafal Bogacz, Malcolm W. Brown, Christophe Giraud-Carrier, Model of Familiarity Discrimination in the Perirhinal Cortex. Journal of Computational Neuroscience, 10 (1). ISSN 0929-5313, pp. 5–23. January 2001. PDF, 174 Kbytes.

2000

• R Bogacz, MW Brown, C Giraud-Carrier, Frequency-based Error Back-propagation in a Cortical Network. Proceedings of the IEEE-INNS-ENNS International Joint Conference on Neural Networks, Vol. II. ISBN 0-7695-0619-4, pp. 211–216. July 2000. PDF, 57 Kbytes.
• Rafal Bogacz, Christophe Giraud-Carrier, A Novel Modular Neural Architecture for Rule-based and Similarity-based Reasoning. Chapter in Hybrid Neural Systems, LNAI 1778. S. Wermter, R. Sun, (eds.), pp. 63–77. March 2000. PDF, 229 Kbytes.

1999

• Rafal Bogacz, Urszula Markowska-Kaczmar, Andrzej Kozik, Blinking Artefact Recognition in EEG Signal by Neural Network. Proceedings of the Fourth Conference on Neural Networks and Their Applications, pp. 502–507. November 1999. PDF, 75 Kbytes.
• R. Bogacz, M. W. Brown, C. Giraud-Carrier, High Capacity Neural Networks for Familiarity Discrimination. Proceedings of the Ninth International Conference on Artificial Neural Networks (ICANN99), pp. 773–778. September 1999. PDF, 64 Kbytes.

1998

• Rafal Bogacz, Christophe Giraud-Carrier, Learning Meta-Rules of Selection in Expert Systems. Proceedings of the Fourth World Congress on Expert Systems. ISBN 1-882345-22-3, pp. 576–581. March 1998. PDF, 52 Kbytes.

1997

• Rafal Bogacz, Christophe Giraud-Carrier, Supervised Competitive Learning for Finding Positions of Radial Basis Functions. Proceedings of the Third Conference on Neural Networks and Their Applications. ISBN 83-90-85-87-03, pp. 701–706. October 1997. PDF, 50 Kbytes.

1996

• Rafal Bogacz, Knowledge database implemented as a neural network. Proceedings of the Second Conference on Neural Networks and Their Applications, pp. 66–71. April 1996. PDF, 93 Kbytes.